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Sourdough Pumpkin Muffins with Freshly Milled Flour

These sourdough pumpkin muffins are made with freshly milled flour and check all the boxes for a healthy, delicious fall treat!

sourdough pumpkin muffin showing crumb

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Fall flavors are my favorite. Pumpkin everything is my motto this time of year!

I love the spice and sweetness of pumpkin desserts and this sourdough pumpkin muffin is one of our favorite sourdough recipes using pumpkin puree.

This recipe is a great way to get whole grains into your family’s diet. They are so yummy, they won’t notice it’s whole grain flour!

If you are on the fence about using fresh milled flour in your baking, try quick breads and muffins. They turn out very similarly to those made with white flour but pack all that extra nutrition!

Why I love this recipe for Sourdough Pumpkin Muffins

These muffins are not only incredibly delicious, but they are actually quite healthy!

Made with freshly milled whole grain flour and long fermented with sourdough starter, your family will love this tasty fall muffin!

This recipe is also refined sugar free!

sourdough pumpkin muffins on a wood cutting board

What is Active Sourdough Starter?

Active starter is starter that has been fed within the last 24 hours and is bubbly and active looking.

What is Sourdough Discard?

Sourdough starter discard is sourdough starter that has not been fed recently and may have a liquid on top and smell of acetone.

Why Fresh Milled Flour?

Freshly milled flour has the bran and germ which holds all of the nutrition.

Store bought flour is mechanically sifted to remove all of the bran and germ to make the flour shelf stable.

Flour that is fresh milled has a high amount of fiber as well which adds to its health benefits.

close up of sourdough pumpkin muffin on cooling rack

Ingredients you will need to make Sourdough Pumpkin Muffins

  • Flour: I use freshly milled hard white wheat. Of course, you can use all purpose flour or whole wheat flour. Fresh milled soft white wheat would work great, as well.
  • Sourdough Starter: For best results, use active sourdough starter if doing long fermented option. Sourdough discard can be used for no wait version.
  • Pumpkin Puree: Take care to not use pumpkin pie filling as it contains a lot of sugar. I use homemade pumpkin puree, but canned pumpkin puree works great.
  • Olive Oil: Melted coconut oil will work as well.
  • Honey or Maple Syrup
  • Egg
  • Salt
  • Pumpkin Pie Spice
  • Vanilla Extract
  • Baking Powder (leavening agent)
  • Baking Soda (leavening agent)

For complete ingredient amounts, see recipe card below

How to make Pumpkin Sourdough Muffins (PLEASE NOTE THIS RECIPE MAKES 9 MUFFINS)

Mix the batter

For no wait option:

In a large mixing bowl, combine the flour with the salt, baking powder, and baking soda.

In a separate bowl, combine the starter, oil, honey/maple syrup, pumpkin puree, vanilla, and pumpkin pie spice.

Add wet ingredients to dry ingredients and mix until well combined.

For long fermented option:

The night before, mix the flour, starter, and pumpkin puree. Cover with plastic wrap and allow to ferment at room temperature overnight.

The next day, add remaining ingredients and proceed with baking.

sourdough pumpkin muffin batter in brown bowl with wooden spurtle

Bake the muffins

Preheat the oven to 400 degrees F.

NOTE: THIS RECIPE MAKES 9 MUFFINS

Prepare a 12 cup muffin tin by either spraying with oil or lining with muffin liners.

Scoop batter into the muffin tin cups equally.

Bake for 15-18 minutes in preheated oven.

Allow to cool on a cooling rack before storing.

overhead shot of sourdough pumpkin muffin batter in muffin tin

Storage

Store muffins in a plastic bag or airtight container on the counter for 3-4 days.

Freeze muffins in a freezer safe bag for up to 3 months.

over head shot of sourdough pumpkin muffins on a cutting board
over head shot of sourdough pumpkin muffins on a cutting board

Sourdough Pumpkin Muffins with Freshly Milled Flour

Mary Rose
With the flavors of fall, these sourdough pumpkin muffins made with whole grain flour are not only incredibly delicious, but very nutritious!
Prep Time 5 minutes
Cook Time 15 minutes
Course Breakfast
Cuisine American
Servings 9 muffins

Equipment

  • 1 12 cup muffin tin NOTE: THIS RECIPE MAKES 9 MUFFINS

Ingredients
  

  • 2 cups Flour 144 grams
  • 1/2 cup Sourdough Starter 130 grams
  • 1 cup Pumpkin Puree 270 grams
  • 1/4 cup Olive Oil 43 grams
  • 1/4 cup Honey or Maple Syrup 70 grams
  • 1 Egg
  • 1 tsp Salt
  • 1 tsp Baking Powder
  • 1 tsp Baking Soda

Instructions
 

For Long Fermented Option

  • In a large bowl combine the flour, pumpkin puree, and the sourdough starter.
  • Mix well. Cover with plastic wrap and allow to ferment 8-24 hours.
  • The next day, add the remaining ingredients and proceed to bake.

No Wait Option

  • Preheat oven to 400 degrees F.
  • In a large bowl combine the flour with the salt, baking powder, and baking soda.
  • In a separate bowl, combine the rest of the ingredients.
  • Add the wet ingredients to the dry ingredients.
  • Mix until well combined.
  • Prepare a 12 cup muffin tin by spraying with oil or lining with muffin liners. NOTE: THIS RECIPE MAKES 9 MUFFINS.
  • Scoop the muffin batter equally into 9 of the cups.
  • Bake for 15-18 minutes.

Notes

Store in a plastic bag or airtight container on the counter for 3-4 days.
Freeze muffins in a freezer bag for up to 3 months.
Keyword Easy Sourdough Recipe, Freshly Milled Flour, Sourdough, Sourdough Pumpkin Muffins, Sourdough Recipes

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