Healthy Fresh Milled Einkorn Chocolate Chip Muffins
Einkorn chocolate chip muffins made with fresh milled flour for the softest, most delicious muffin you’ve ever had!
These muffins are a new favorite in our home. I make them at least once a week and we enjoy them as snacks in the afternoon.

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Whole grain Einkorn flour makes these anything by your average muffin! The flavor this ancient grain imparts is unmatched.
And the health benefits of using fresh milled flour are well documented. The wheat berry has many of the essential nutrients packed in it’s tiny package!
Using an ancient grain like Einkorn adds the benefit if easier digestibility, as well!
Even picky eaters will love these muffins and it’s a great way to add whole grain flour into your kids diets.
Why Fresh Milled Einkorn?
As stated above, the benefits of whole grain flour are many and very well documented.
However, another reason to use fresh milled Einkorn flour is for the amazing flavor it adds to your recipes.
Ancient grains are easier on the digestive system compared to modern wheat. If I am not long fermenting a recipe, I always choose Einkorn flour for this reason.
It’s nutty flavor pairs perfectly with the sweetness of the chocolate chips!
To mill my Einkorn berries, I use a grain mill.
The grain mill I use is the Nutrimill Classic Grain Mill

Ingredients needed for these chocolate chip Einkorn muffins
- Fresh Milled Einkorn Flour – You can use all purpose Einkorn flour if you choose. But, the whole grain flour is so much more flavorful!
- Salt
- Baking Powder
- Baking Soda
- Chocolate Chips – I use dark chocolate chips, but semi-sweet chocolate chips will work as well.
- Olive Oil – May use melted coconut oil or avocado oil.
- Honey – May substitute with maple syrup.
- Egg
- Milk – I use whole milk but any milk product will work just fine.
- Vanilla Extract
For complete recipe amounts, see recipe card below
For my Einkorn Sourdough Sandwich bread recipe, click here!
How to make Einkorn Chocolate Chip Muffins
Mill the flour
Mill 1 1/3 cup of berries on the finest setting of your grain mill.
Preheat oven to 400 degrees F
Mix the batter
In a large bowl mix the dry ingredients.
Fold in the cup of chocolate chips to the flour mixture.
In a separate bowl or a large measuring cup, add the wet ingredients and mix well.
Pour the wet ingredients over the flour mixture with chocolate chips.
Fold in until there is no more dry flour.

Prepare the muffin tin
Either spray a 12 cup muffin tin with oil or line with muffin liners.
Using a cookie scoop or small measuring cup, scoop the batter evenly in the 12 cups.
Bake the muffins
Bake in preheated oven for 15 minutes.
Allow to cool on a cooling rack before storing.
Storage Tips
Store cooled muffins in an airtight container at room temperature for 3-4 days.
For longer storage, freeze in freezer safe bag for up to 3 months.


Healthy Fresh Milled Einkorn Chocolate Chip Muffins
Equipment
- 12 cup muffin tin
Ingredients
- 1 1/3 cups Einkorn Berries 268 grams
- 1 tsp Salt 5 grams
- 1 tsp Baking powder 2 grams
- 1 tsp Baking soda 3 grams
- 1 cup Chocolate chips 170 grams
- 1/4 cup Olive oil 45 grams
- 1/3 cup Honey or Maple syrup 160 grams
- 1 Egg 44 grams
- 1 cup Milk 255 grams
- 1 tsp Vanilla extract 3 grams
Instructions
- First, mill your wheat berries on the finest setting of your grain mill.
- Preheat the oven to 400 degrees F.
- In a large bowl, add the flour, baking soda, baking powder, and salt. Mix well.
- Add the chocolate chips and fold into the flour mixture.
- In a separate bowl mix the oil, honey, egg, milk, and vanilla extract.
- Whisk until completely combined.
- Pour into the flour mixture and fold until there is no more dry flour.
- Prepare a muffin tin by spraying with oil or lining with muffin liners.
- Evenly distribute the batter into the muffin tin using a cookie scoop or small measuring cup.
- Bake in preheated oven for 15 minutes.
- Cool on a wire rack completely before storing.
I wonder if these could be turned into chocolate muffins with chocolate chips. Not sure how to adjust for the cocoa or how much to use.
Sure. I would just decrease the flour by 1/2 cup and substitute cocoa powder. Let me know if you try it!